Comment on 'A congruence index for testing topological similarity between trees'
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چکیده
In response to comment on ‘A congruence index for testing topological similarity between trees’ Damien M. de Vienne1,∗, Tatiana Giraud1 and Olivier C. Martin2,3 1Univ Paris-Sud, Laboratoire de Recherche en Informatique, UMR8623, Orsay F-91405; CNRS, Orsay F-91405, 2Univ Paris-Sud, UMR8626, LPTMS, Orsay F-91405; CNRS, Orsay F-91405 and 3Univ Paris-Sud, UMR8120, Laboratoire de Génétique Végétale du Moulon, Gif-sur-Yvette F-91190, France
منابع مشابه
In response to comment on ‘A congruence index for testing topological similarity between trees’
In response to comment on ‘A congruence index for testing topological similarity between trees’ Damien M. de Vienne1,∗, Tatiana Giraud1 and Olivier C. Martin2,3 1Univ Paris-Sud, Laboratoire de Recherche en Informatique, UMR8623, Orsay F-91405; CNRS, Orsay F-91405, 2Univ Paris-Sud, UMR8626, LPTMS, Orsay F-91405; CNRS, Orsay F-91405 and 3Univ Paris-Sud, UMR8120, Laboratoire de Génétique Végétale ...
متن کاملA congruence index for testing topological similarity between trees
MOTIVATION Phylogenetic trees are omnipresent in evolutionary biology and the comparison of trees plays a central role there. Tree congruence statistics are based on the null hypothesis that two given trees are not more congruent (topologically similar) than expected by chance. Usually, one searches for the most parsimonious evolutionary scenario relating two trees and then one tests the null h...
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Let $G=(V,E)$, $V={1,2,ldots,n}$, $E={e_1,e_2,ldots,e_m}$,be a simple connected graph, with sequence of vertex degrees$Delta =d_1geq d_2geqcdotsgeq d_n=delta >0$ and Laplacian eigenvalues$mu_1geq mu_2geqcdotsgeqmu_{n-1}>mu_n=0$. Denote by $Kf(G)=nsum_{i=1}^{n-1}frac{1}{mu_i}$ and $t=t(G)=frac 1n prod_{i=1}^{n-1} mu_i$ the Kirchhoff index and number of spanning tree...
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Cophylogenetic studies aim at testing specific hypotheses to understand the nature of coevolving associations between sets of organisms, such as host and parasites. Monogeneans and their hosts provide and interesting platform for these studies due to their high host specificity. In this context, the objective of the present study was to establish whether the relationship between Anacanthorus sp...
متن کاملMeasuring Stratigraphic Congruence Across Trees, Higher Taxa, and Time
The congruence between the order of cladistic branching and the first appearance dates of fossil lineages can be quantified using a variety of indices. Good matching is a prerequisite for the accurate time calibration of trees, while the distribution of congruence indices across large samples of cladograms has underpinned claims about temporal and taxonomic patterns of completeness in the fossi...
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عنوان ژورنال:
- Bioinformatics
دوره 25 1 شماره
صفحات -
تاریخ انتشار 2009